TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Infestans
         (633 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376613.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...   779   0.0  

>gb|GL376613.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582016,
             whole genome shotgun sequence
          Length = 784520

 Score =  779 bits (2011), Expect = 0.0
 Identities = 403/641 (62%), Positives = 485/641 (75%), Gaps = 15/641 (2%)
 Frame = -1

Query: 8     SLSRSFSSWRRLPS--SRFDNAVLRELPIDTEPKNFVRSAVSGACFSRVDPTPIASPELV 65
             SL R F  WR+     SRFDNAVLRELPID EP+N+VRSAV GACFSR+ PTPI  PELV
Sbjct: 81908 SLYRGF--WRKSTPAPSRFDNAVLRELPIDPEPQNYVRSAVPGACFSRISPTPIVKPELV 81735

Query: 66    VTSPNSLLLVGIELNESDSKSQDEGVNGEGDDLQPIETLVPILAGNTLLPGAETAAQCYC 125
             + S ++L L GIE+   ++   DE    E   L PI+ L P LAGN L PG+ETAAQCYC
Sbjct: 81734 IASKDALKLAGIEVYRRENDVDDESAKHE---LVPIDELAPFLAGNDLFPGSETAAQCYC 81564

Query: 126   GHQFGFFSGQLGDGAALYLGEVVA-VDERWELQLKGSGLTPYSRTADGRKVLRSTLREFL 184
             GHQFG+FSGQLGDGAA+YLGEV+   +ERWE+QLKG+GLTPYSRTADGRKVLRSTLREFL
Sbjct: 81563 GHQFGYFSGQLGDGAAIYLGEVINNANERWEVQLKGAGLTPYSRTADGRKVLRSTLREFL 81384

Query: 185   CSENMHALGVPTTRAGSVVTSKETQVLRDIFYNGDAKMEPTAVVTRIAKSFLRFGSFEIF 244
              SE+MHALGVPTTRAGSVV S++T V+RDIFY+G+ K EPTAVV RIAKSFLRFGSFEIF
Sbjct: 81383 ASEHMHALGVPTTRAGSVVVSRDTTVVRDIFYDGNPKQEPTAVVMRIAKSFLRFGSFEIF 81204

Query: 245   KDEDKLTGLAGPSAHLENKEEMMREMLDFTIRQYYSEI------SGARKYEKFFQEVVRR 298
             K++D  TG AGPSA L +K +MMR+MLDFTI+QY+ ++      S   KY  FF+EVV+R
Sbjct: 81203 KEKDPQTGRAGPSARLPSKADMMRQMLDFTIKQYFPDVWATPNASQEAKYVLFFEEVVQR 81024

Query: 299   TAMLVAKWQSIGFCHGVLNTDNMSIVGDTLDYGPFGFMEHFDPKHICNTSDDRGRYRYEA 358
             TA LVAKWQSIGFCHGVLNTDNMSIVGDTLDYGP+GFMEHF+P+HICNTSDD GRYRYEA
Sbjct: 81023 TARLVAKWQSIGFCHGVLNTDNMSIVGDTLDYGPYGFMEHFNPEHICNTSDDSGRYRYEA 80844

Query: 359   QPEVCKWNCGVLADQLGLVTERAGLEPILESFDAVYEAEYMRLMREKLGLSDEE--KEDK 416
             QP++CKWN  V ADQL LV +R  LEP LE+++  +  E  RL+R KLGLS +    ED+
Sbjct: 80843 QPDICKWNLSVFADQLALVLDRKDLEPALETYNDTFSQELSRLLRAKLGLSHKSFPSEDR 80664

Query: 417   MLVDTLFDVLAFTGADFTCTFRYLSELDVFETGDCREQVLNKLVAVSETLAQQKRKLELD 476
              L D+LFDVL  TG+DFTCTFR L+++  F+       VL++LV  SETL Q KR++   
Sbjct: 80663 ALTDSLFDVLTETGSDFTCTFRALADIQPFDESS-HAAVLDRLVKFSETLKQVKRRV--- 80496

Query: 477   SGGVSDAQFDMVVMLLQENPVRARQYGITPALVAQIKANREAKKLLDATTDEERMDSIRT 536
                 +DAQ++MV +LL+ENP++AR YGIT     Q+ A RE++K LD  TD+ER DS+R 
Sbjct: 80495 -SSFTDAQYEMVRLLLRENPMQARMYGITDENFKQMTAERESRKKLDEFTDDERRDSVRA 80319

Query: 537   VWVDWIDVYISRVKEQ----GDAASDADRRRRMLDVNPLFVLRNHVAQKAIDFAHEGDYD 592
              W  WID Y++R+KE+     DA  DA RR +M   NP F+LRNHVAQKAID A +GDY 
Sbjct: 80318 AWATWIDKYVNRLKEETECTPDAEKDAQRRTQMQQANPKFILRNHVAQKAIDLAADGDYI 80139

Query: 593   AVQHIFELVTNPFDEPTDDRDLEYARPQDSSTAPLCVSXSS 633
              VQ IF L+T+PFDE ++D DL YA P+D S  PLCVS SS
Sbjct: 80138 GVQQIFNLLTHPFDEGSED-DLVYACPEDPSAPPLCVSCSS 80019



 Score =  360 bits (925), Expect = 2e-99
 Identities = 249/610 (40%), Positives = 328/610 (53%), Gaps = 52/610 (8%)
 Frame = -1

Query: 62    PELVVTSPNSLLLVGIELNESDSKSQDEGVNGEGDDLQPIETLVPILAGNTLLPGAETAA 121
             PELVV S ++L L G+ + E   + +DE    E   +  I+ LVPILA +T +P +E A+
Sbjct: 71126 PELVVVSKDALRLAGLRVEE---RKKDEDATEERR-VTSIDGLVPILASDTPVPESEPAS 70959

Query: 122   QCYCGHQFGFFSGQLGDGAALYLGEVV----AVDERWELQLKGSG--LTPYS--RTADGR 173
             Q YC HQ   F+ ++GDG A YL        + + RWE+  +G+G  L P +  R A G 
Sbjct: 70958 QFYCRHQCDAFANRVGDGIASYLNTPADDEGSANVRWEVHFEGTGPALCPCNEDRQALGL 70779

Query: 174   KVLRST-------------------------LREFLCSENMHALGVPTTRAGSVVTSKET 208
               + ++                         LREFL SE+++ALG+PTTRA SVV     
Sbjct: 70778 VCIFASMVNALTVL*LKILFPFVNGEMQTLALREFLGSEHLNALGIPTTRAASVVAVPNE 70599

Query: 209   QVLRDIFYNGDAKMEPTAVVTRIAKSFLRFGSFEIFKDEDKLTGLAGPSAHLENKE-EMM 267
                 D   +  AK EP+A+V R+A+SFL FGSF IF   D     A P+++ EN   EM 
Sbjct: 70598 AT--DTNDSAAAKAEPSAIVMRVARSFLSFGSFGIF---DVAKSAARPNSNSENDNAEMA 70434

Query: 268   REMLDFTIRQYYSEISGARK------YEKFFQEVVRRTAMLVAKWQSIGFCHGVLNTDNM 321
             R++LDFTI+ YY E+           Y  FF+E+V+RTA LVAKWQSIGFCHG L+ ++M
Sbjct: 70433 RQLLDFTIKHYYPEVRMTENVPPETMYRLFFKELVQRTAHLVAKWQSIGFCHGELDANHM 70254

Query: 322   SIVGDTLDYGPFGFMEHFDPKHICN----TSDDRGRYRYEAQPEVCKWNCGVLADQLGLV 377
             SIVGDTL  G FGFMEH+DP  +C+      D  GR RYE QP VCK N  VLADQL LV
Sbjct: 70253 SIVGDTLQDGAFGFMEHYDPTFLCSDAKAADDSCGRCRYENQPNVCKENLSVLADQLALV 70074

Query: 378   TERAGLEPILESFDAVYEAEYMRLMREKLGLSDE--EKEDKMLVDTLFDVLAFTGADFTC 435
               R  LE  L +FD  +  E+ RLMREKLGL  +    +DK LVD L  VL  T ADFT 
Sbjct: 70073 VPREELEQELNAFDDAFSKEFYRLMREKLGLLHKFFPIDDKALVDDLIKVLTETSADFTR 69894

Query: 436   TFRYLSELDVFETGDCREQ--VLNKLVAVSETLAQQKRKLELDSGGVSDAQFDMVVMLLQ 493
             TFR L+ +  F   D R Q  V+++LV +S++L Q KR                      
Sbjct: 69893 TFRSLAGVTPF---DARTQLMVVDELVGLSQSLDQAKR---------------------- 69789

Query: 494   ENPVRARQYGITPALVAQIKANREAKKLLDATTDEERMDSIRTVWVDWIDVYISRVKEQG 553
                 RA +  + P                 A T+ ER ++IR  W  W+  Y +R+KE+ 
Sbjct: 69788 ----RAARMKLPP----------------PAKTNAERHEAIRFAWTGWVRTYANRLKEES 69669

Query: 554   DAASDA----DRRRRMLDVNPLFVLRNHVAQKAIDFAHEGDYDAVQHIFELVTNPFDEPT 609
             D   DA     R  ++   NP  VLR+HVAQKA++ A EG+Y  V HI EL+ +PFD   
Sbjct: 69668 DRVPDAANAMHRLTQVHRTNPAVVLRDHVAQKAVECAREGEYQLVAHIVELLAHPFD-AV 69492

Query: 610   DDRDLEYARP 619
                D  YA P
Sbjct: 69491 SPNDRVYAYP 69462


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,985,948
Number of Sequences: 82
Number of extensions: 437915
Number of successful extensions: 2447
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2346
Number of HSP's gapped (non-prelim): 332
length of query: 633
length of database: 14,267,206
effective HSP length: 109
effective length of query: 524
effective length of database: 14,258,268
effective search space: 7471332432
effective search space used: 7471332432
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)